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Table of Contents
PDB plugin
Compatible with DokuWiki
2006/11/06 or later
Plugin PDB: Integrated utility for Protein data base
The missing download url means that this extension cannot be installed via the Extension Manager. Please see Publishing a Plugin on dokuwiki.org. Recommended are public repository hosts like GitHub, GitLab or Bitbucket.
This extension has not been updated in over 2 years. It may no longer be maintained or supported and may have compatibility issues.
This plugin creates a link, a searchbox and protein images by using PDB ID.
This plugin caches protein images from RCSB server in /data/media/rcsb_image/ directory, and it caches structure XML summary from NCBI database in /data/media/ncbi_esummary/ directory.
| Details and Download | http://symplus.edu-wiki.org/en/pdb_plugin |
|---|---|
| ZIP file | pdb.zip (8.5KB) |
Functions
{{pdb>[Command]:[PDB ID]}}
| Command | item | function |
|---|---|---|
| small | image | Show a small image (82px in width) retrieved from RCSB database |
| medium | image | Show a small image (252px in width) retrieved from RCSB database |
| large | image | Show a small image (502px in width) retrieved from RCSB database |
| fullSmall | image link | Show a combination of an image and a short description |
| searchbox | form | Show a searchbox for the RCSB PDB |
| link | link | Show a link for the PDB ID |
| short | link | Show the PDB link and brief description from NCBI Structure database |
| long | link | Show the PDB link and detailed description from NCBI Structure database |
| structureID | link | Show a Structure ID for the NCBI database |
| summaryXML | xml | Show a XML summary data from the NCBI database using Entrez Utilities |
| clear_summary | - | Clear cached XML files in /data/media/ncbi_esummary |
| clear_image | - | Clear cached image files in /data/media/rcsb_image |