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plugin:pdb

PDB Plugin

Compatible with DokuWiki

2016-6-26a

plugin Plugin PDB: Integrated utility for Protein data base

Last updated on
2016-10-24
Provides
Syntax
Repository
Source

Similar to pubchem, pubmed

Tagged with biology, chemistry, science

This plugin creates a link, a searchbox and protein images by using PDB ID.

This plugin caches protein images from RCSB server in /data/media/rcsb_image/ directory, and it caches structure XML summary from NCBI database in /data/media/ncbi_esummary/ directory.

Demo: http://symplus.edu-wiki.org/doku.php/en/pdb_plugin

Functions

{{pdb>[Command]:[PDB ID]}}

Command item function
small imageShow a small image (82px in width) retrieved from RCSB database
medium imageShow a small image (252px in width) retrieved from RCSB database
large imageShow a small image (502px in width) retrieved from RCSB database
fullSmall image
link
Show a combination of an image and a short description
searchbox form Show a searchbox for the RCSB PDB
link link Show a link for the PDB ID
short link Show the PDB link and brief description from NCBI Structure database
long link Show the PDB link and detailed description from NCBI Structure database
structureID link Show a Structure ID for the NCBI database
summaryXML xml Show a XML summary data from the NCBI database using Entrez Utilities
clear_summary - Clear cached XML files in /data/media/ncbi_esummary
clear_image - Clear cached image files in /data/media/rcsb_image
plugin/pdb.txt · Last modified: 2016-10-24 02:51 by iobataya