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Plugin PDB: Integrated utility for Protein data base
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plugin:pdb
PDB Plugin
Compatible with DokuWiki
2016-6-26a
This plugin creates a link, a searchbox and protein images by using PDB ID.
This plugin caches protein images from RCSB server in /data/media/rcsb_image/ directory, and it caches structure XML summary from NCBI database in /data/media/ncbi_esummary/ directory.
Functions
{{pdb>[Command]:[PDB ID]}}
| Command | item | function |
|---|---|---|
| small | image | Show a small image (82px in width) retrieved from RCSB database |
| medium | image | Show a small image (252px in width) retrieved from RCSB database |
| large | image | Show a small image (502px in width) retrieved from RCSB database |
| fullSmall | image link | Show a combination of an image and a short description |
| searchbox | form | Show a searchbox for the RCSB PDB |
| link | link | Show a link for the PDB ID |
| short | link | Show the PDB link and brief description from NCBI Structure database |
| long | link | Show the PDB link and detailed description from NCBI Structure database |
| structureID | link | Show a Structure ID for the NCBI database |
| summaryXML | xml | Show a XML summary data from the NCBI database using Entrez Utilities |
| clear_summary | - | Clear cached XML files in /data/media/ncbi_esummary |
| clear_image | - | Clear cached image files in /data/media/rcsb_image |
plugin/pdb.txt · Last modified: 2016-10-24 02:51 by iobataya
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