DokuWiki

It's better when it's simple

User Tools

Site Tools


plugin:pubmed

Pubmed Plugin

Compatible with DokuWiki

  • 2017-02-19 "Frusterick Manners" unknown
  • 2016-06-26 "Elenor Of Tsort" yes
  • 2015-08-10 "Detritus" unknown
  • 2014-09-29 "Hrun" unknown

plugin Plugin that retrieves the information of scientific journals from PubMed with PMID

Last updated on
2016-10-24
Provides
Syntax

Similar to pdb, pubchem

Tagged with biology, chemistry, medical, references, science

Functions

This is a plugin for DokuWiki that retrieves the information from PubMed with PMID. The plugin stores NCBI ESummary XML file /data/media/ncbi_esummary directory.

{{pubmed>[Command]:[PubMed ID]}}
Command Item Function
short link Show a short pubmed link from NCBI Structure database
long link Show a detailed pubmed link from NCBI Structure database
summaryXML xml Show a XML summary data from the NCBI database using Entrez Utilities
clear_summary Clear cached XML files in /data/media/ncbi_esummary

Examples

Short

Code

{{pubmed>short:9039911}}

Display

Wilmut I et al.Nature 385 p810-3 (1997 Feb 27)

Long

Code

{{pubmed>long:9039911}}

Display

Viable offspring derived from fetal and adult mammalian cells.
Wilmut I, Schnieke AE, McWhir J, Kind AJ, Campbell KH,Nature385p810-3(1997 Feb 27)

SummaryXML

Code

{{pubmed>summaryXML:9039911}}

Display

<?xml version="1.0"?>
<!DOCTYPE eSummaryResult PUBLIC "-//NLM//DTD eSummaryResult, 29 October 2004//EN" "http://www.ncbi.nlm.nih.gov/entrez/query/DTD/eSummary_041029.dtd">
<eSummaryResult>
<DocSum>
	<Id>9039911</Id>
	<Item Name="PubDate" Type="Date">1997 Feb 27</Item>
	<Item Name="EPubDate" Type="Date"></Item>
	<Item Name="Source" Type="String">Nature</Item>
	<Item Name="AuthorList" Type="List">
		<Item Name="Author" Type="String">Wilmut I</Item>
		<Item Name="Author" Type="String">Schnieke AE</Item>
		<Item Name="Author" Type="String">McWhir J</Item>
		<Item Name="Author" Type="String">Kind AJ</Item>
		<Item Name="Author" Type="String">Campbell KH</Item>
	</Item>
...

History

  • 2016.10.24
    • URLs are changed according to changes in Web API of NCBI database.
  • 2013.01.30
    • This plugin became independent on other helper plugins. You don't need bio plugin nor cache plugin.
  • 2008.03.22
    • Some functions were parted into Bio Plugin1) and Cache Plugin.
  • 2008.02.26
    • Cache ESummary XML file in /data/media/ncbi_esummary directory
  • 2007.12.08
    • Fix around directory creation & ACL
    • Append an icon image

Notes

  • Please note that an improved version of this plugin is available on GitHub
1)
removed, discontinued
plugin/pubmed.txt · Last modified: 2017-10-28 13:35 by Aleksandr