plugin:pubmed
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Table of Contents
Pubmed Plugin
Compatible with DokuWiki
2016-06-26a
This extension has not been updated in over 2 years. It may no longer be maintained or supported and may have compatibility issues.
Similar to doi, pdb, pubchem, pubmed2020
Functions
This is a plugin for DokuWiki that retrieves the information from PubMed with PMID. The plugin stores NCBI ESummary XML file /data/media/ncbi_esummary directory.
{{pubmed>[Command]:[PubMed ID]}}
Command | item | function |
---|---|---|
short | link | Show a short pubmed link from NCBI Structure database |
long | link | Show a detailed pubmed link from NCBI Structure database |
summaryXML | xml | Show a XML summary data from the NCBI database using Entrez Utilities |
clear_summary | - | Clear cached XML files in /data/media/ncbi_esummary |
Examples
short
code
{{pubmed>short:9039911}}
Display
Wilmut I et al.Nature 385 p810-3 (1997 Feb 27)
long
code
{{pubmed>long:9039911}}
Display
Viable offspring derived from fetal and adult mammalian cells. Wilmut I, Schnieke AE, McWhir J, Kind AJ, Campbell KH,Nature385p810-3(1997 Feb 27)
summaryXML
code
{{pubmed>summaryXML:9039911}}
Display
<?xml version="1.0"?> <!DOCTYPE eSummaryResult PUBLIC "-//NLM//DTD eSummaryResult, 29 October 2004//EN" "http://www.ncbi.nlm.nih.gov/entrez/query/DTD/eSummary_041029.dtd"> <eSummaryResult> <DocSum> <Id>9039911</Id> <Item Name="PubDate" Type="Date">1997 Feb 27</Item> <Item Name="EPubDate" Type="Date"></Item> <Item Name="Source" Type="String">Nature</Item> <Item Name="AuthorList" Type="List"> <Item Name="Author" Type="String">Wilmut I</Item> <Item Name="Author" Type="String">Schnieke AE</Item> <Item Name="Author" Type="String">McWhir J</Item> <Item Name="Author" Type="String">Kind AJ</Item> <Item Name="Author" Type="String">Campbell KH</Item> </Item> .....
History
- 2016.10.24
- URLs are changed according to changes in Web API of NCBI database.
- 2013.1.30
- This plugin became independent on other helper plugins. You don't need bio plugin nor cache plugin.
- 2008.3.22
- 2008.2.26
- Cache ESummary XML file in /data/media/ncbi_esummary directory
- 2007.12.08
- Fix around directory creation & ACL
- Append an icon image
plugin/pubmed.1477270147.txt.gz · Last modified: 2016-10-24 02:49 by iobataya