Differences

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--- plugin:pubmed [2013-01-31 04:12] – URL corrected iobataya
+++ plugin:pubmed [2023-08-07 15:26] (current) – iobataya
@@ Line 1: / Line 1: @@
-====== Pubmed plugin ======
+====== Pubmed Plugin ======
 ---- plugin ----
-description: Plugin that retrieves the information of scientific journals from PubMed with PMID.
+description: Plugin that retrieves the information of scientific journals from PubMed with PMID
 author     : Ikuo Obataya
 email      : I.Obataya[at]gmail.com
 type       : syntax
-lastupdate : 2013-01-30
+lastupdate : 2023-08-07
-compatible : 2006-11-06 or later
+compatible : Jack Jackrum
 depends    :
 conflicts  :
-similar    :
+similar    : pubchem,pdb
 tags       : biology chemistry medical science references
-downloadurl: http://github.com/iobataya/dokuwiki-plugin-pubmed/archive/master.zip
+downloadurl: https://github.com/iobataya/dokuwiki-plugin-pubmed/archive/master.zip
+bugtracker : https://github.com/iobataya/dokuwiki-plugin-pubmed/issues
+sourcerepo : https://github.com/iobataya/dokuwiki-plugin-pubmed
 ----
+===== Functions =====
-======Functions======
+This is a plugin for DokuWiki that retrieves the information from PubMed with PMID. The plugin stores NCBI ESummary XML file ''/data/media/ncbi_esummary'' directory.
-This is a plugin for DokuWiki that retrieves the information from PubMed with PMID. The plugin stores NCBI ESummary XML file /data/media/ncbi_esummary directory.
-**%%{{pubmed>[Command]:[PubMed ID]}}%%**
+  {{pubmed>[Command]:[PubMed ID]}}
-^  Command        ^  item  ^  function  |
+^  Command        ^  Item   ^  Function  ^
-^[[#short]]        |link |Show a short pubmed link from NCBI Structure database|
+^[[#short]]       |  link   |Show a short pubmed link from NCBI Structure database  |
-^[[#long]]         |link |Show a detailed pubmed link from NCBI Structure database|
+^[[#long]]        |  link   |Show a detailed pubmed link from NCBI Structure database  |
-^[[#summaryXML]]   |xml  |Show a XML summary data from the NCBI database using Entrez Utilities|
+^[[#summaryXML]]  |  xml    |Show a XML summary data from the NCBI database using Entrez Utilities  |
-^clear_summary     |  -  |Clear cached XML files in /data/media/ncbi_esummary|
+^clear_summary    |  --     |Clear cached XML files in ''/data/media/ncbi_esummary''  |
-======Examples======
+===== Examples =====
-=====short=====
-**code**\\
+==== Short ====
+Code
   {{pubmed>short:9039911}}
-**Display**\\
+Display
   Wilmut I et al.Nature 385 p810-3 (1997 Feb 27)
-=====long=====
-**code**\\
+==== Long ====
+Code
   {{pubmed>long:9039911}}
-**Display**\\
+Display
-<code>
+  Viable offspring derived from fetal and adult mammalian cells.
-Viable offspring derived from fetal and adult mammalian cells.
+  Wilmut I, Schnieke AE, McWhir J, Kind AJ, Campbell KH,Nature385p810-3(1997 Feb 27)
-Wilmut I, Schnieke AE, McWhir J, Kind AJ, Campbell KH,Nature385p810-3(1997 Feb 27)
-</code>
+==== SummaryXML ====
-=====summaryXML=====
-**code**\\
+Code
   {{pubmed>summaryXML:9039911}}
-**Display**\\
+Display
-<code>
+<code xml>
 <?xml version="1.0"?>
 <!DOCTYPE eSummaryResult PUBLIC "-//NLM//DTD eSummaryResult, 29 October 2004//EN" "http://www.ncbi.nlm.nih.gov/entrez/query/DTD/eSummary_041029.dtd">
@@ Line 63: / Line 70: @@
 		<Item Name="Author" Type="String">Campbell KH</Item>
 	</Item>
+...
-.....
 </code>
-====== History ======
+===== History =====
-  *2013.1.30
-    *This plugin became independent on other helper plugins. You don't need bio plugin nor cache plugin.
+  * 2016.10.24
-  *2008.3.22
+    * URLs are changed according to changes in Web API of NCBI database.
-    *Some functions were parted into [[bio]] plugin and [[cache]] plugin.
+  * 2013.01.30
-  *2008.2.26
+    * This plugin became independent on other helper plugins. You don't need bio plugin nor cache plugin.
-    *Cache ESummary XML file in /data/media/ncbi_esummary directory
+  * 2008.03.22
-  *2007.12.08
+    * Some functions were parted into Bio Plugin((removed, discontinued)) and [[Cache]] Plugin.
-    *Fix around directory creation & ACL
+  * 2008.02.26
-    *Append an icon image
+    * Cache ESummary XML file in ''/data/media/ncbi_esummary'' directory
+  * 2007.12.08
+    * Fix around directory creation & [[:ACL]]
+    * Append an icon image
+===== Notes =====
+  * Please note that an improved version of this plugin is available on [[plugin:pubmed2020]]