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plugin:jmol2

jmol2 Plugin

Compatible with DokuWiki

2009-12-25c "Lemming"

plugin Plugin for Jmol applet that displays 3D-molecular models.

Last updated on
2010-02-17
Provides
Syntax

This extension has not been updated in over 2 years. It may no longer be maintained or supported and may have compatibility issues.

Tagged with biology, chemistry, science



:!: :!: :!: IMPORTANT NEWS FOR EXISTING JMOL USERS :!: :!: :!:
This is a partial rewrite of the Jmol plugin by Ikuo Obataya.
:!: :!: :!: IMPORTANT NEWS FOR EXISTING JMOL USERS :!: :!: :!:



Download and Installation

Download and install the plugin using the Plugin Manager using the URL given above. Refer to Plugins on how to install plugins manually.

To see a demo online, visit here.

Note: If you do install manually the directory must be named jmol2.

Overview

The goal of this plugin was to provide a simple, ready to go system viewer for chemical structures in 3D. It also bundles the necessary java libraries (hence the 6.5Mb size) so that you should not need to do any configuration to get it up and running as quickly as possible. I haven't thoroughly tested this point on many platforms yet, so any feedback is welcome.

Features

  • Uses the Jmol JavaScript library, an open-source Java viewer for chemical structures in 3D.

Issues and Requests

This package uses a library maintained by someone else which is just focusing on use Jmol into DokuWiki content.

Sites using this plugin

Version history

  • 2010-02-17 (current)
    first release

How to use

Use 'jmol' tag and put the filename of a 3D-molecular models file inside of it. You can set the size of applet and the background color, after the filename.

<jmol ({{namespace:molecule}}) (width) (height) (background)>
  ... Jmol scripts ...
</jmol>

....

<jmol>
  ... more Jmol scripts ...
</jmol>

Examples

Discussion

There's always room for improvement. If you're able to add any contributions to make jmol2 better, please let me know or discuss your thoughts right here (please use ===== Level 3 Headlines ===== to open a new “thread”/issue and ---- (four dashes, horizontal rule) to structure it when needed).

plugin/jmol2.txt · Last modified: 2016-01-26 17:16 by Aleksandr