====== Pubmed plugin ======

---- plugin ----
description: Plugin that retrieves the information of scientific journals from PubMed with only PMID.
author     : Ikuo Obataya
email      : I.Obataya@gmail.com
type       : syntax
lastupdate : 2008-03-22
compatible : 2006-11-06 or later
depends    : cache, bio
conflicts  : 
similar    : 
tags       : biology chemistry medical science references
----

^  ZIP file  ^
|{{http://symplus.edu-wiki.org/_media/computer/source/pubmed.zip}}|
:!: Download [[cache]] plugin and [[bio]] plugin at first if you use plugin manager

[[http://symplus.edu-wiki.org/en/pubmed_plugin|Details and Download]]



======Functions======
This is a plugin for DokuWiki that retrieves the information from PubMed with PMID. The plugin stores NCBI ESummary XML file /data/media/ncbi_esummary directory.

**%%{{pubmed>[Command]:[PubMed ID]}}%%**

^  Command        ^  item  ^  function  |
^[[#short]]        |link |Show a short pubmed link from NCBI Structure database|
^[[#long]]         |link |Show a detailed pubmed link from NCBI Structure database|
^[[#summaryXML]]   |xml  |Show a XML summary data from the NCBI database using Entrez Utilities|
^clear_summary     |  -  |Clear cached XML files in /data/media/ncbi_esummary|

======Examples======
=====short=====
**code**\\ 
  {{pubmed>short:9039911}}

**Display**\\ 
  Wilmut Iet al.Nature385p810-3(1997 Feb 27)
=====long=====
**code**\\ 
  {{pubmed>long:9039911}}

**Display**\\ 
<code>
Viable offspring derived from fetal and adult mammalian cells.
Wilmut I, Schnieke AE, McWhir J, Kind AJ, Campbell KH,Nature385p810-3(1997 Feb 27)
</code>
=====summaryXML=====
**code**\\ 
  {{pubmed>summaryXML:9039911}}

**Display**\\ 
<code>
<?xml version="1.0"?>
<!DOCTYPE eSummaryResult PUBLIC "-//NLM//DTD eSummaryResult, 29 October 2004//EN" "http://www.ncbi.nlm.nih.gov/entrez/query/DTD/eSummary_041029.dtd">
<eSummaryResult>
<DocSum>
	<Id>9039911</Id>
	<Item Name="PubDate" Type="Date">1997 Feb 27</Item>
	<Item Name="EPubDate" Type="Date"></Item>
	<Item Name="Source" Type="String">Nature</Item>
	<Item Name="AuthorList" Type="List">
		<Item Name="Author" Type="String">Wilmut I</Item>
		<Item Name="Author" Type="String">Schnieke AE</Item>
		<Item Name="Author" Type="String">McWhir J</Item>
		<Item Name="Author" Type="String">Kind AJ</Item>
		<Item Name="Author" Type="String">Campbell KH</Item>
	</Item>

.....
	
</code>

====== History ======
  *2008.3.22
    *Some functions were parted into [[bio]] plugin and [[cache]] plugin.
  *2008.2.26
    *Cache ESummary XML file in /data/media/ncbi_esummary directory
  *2007.12.08
    *Fix around directory creation & ACL
    *Append an icon image